Fulvifomes

Fulvifomes Murrill, North. Polyp.: 49(1914)

For synonyms see Index Fungorum (2018)

 

Background

Fulvifomes was described by Murrill (1914) and it is typified by F. robiniae (Murrill) Murrill. Originally, Fulvifomes was characterized by “hymenophore large, perennial, epixylous, sessile, ungulate or applanate; surface sulcate, usually anoderm and often rough or rimose; context woody or punky, brown, rarely dark-red; tubes brown, cylindric, stratose, usually thick- walled; spores smooth, ferruginous or fulvous” and its species were reported as growing on living hosts (Fagus, Juniperus, Quercus, Ribes, Robinia) (Murrill 1914). Wagner and Fischer (2001, 2002) redefined the genus as saprobic on deciduous wood, with resupinate, effused-reflexed or pileate, perennial basidiomata, dimitic hyphal system, ellipsoid, yellowish, IKI- basidiospores and lack of sterile elements like setae. Later, new species were described (Hattori et al. 2014; Zhou 2014, 2015; Ji et al. 2017; Salvador-Montoya et al. 2018) and a new definition of Fulvifomes was provided to include species with substipitate basidiomata with contracted base, solitary or imbricate, corky to woody hard, with pileal surface tomentose or glabrous, with or without a crust; context homogenous or duplex; hyphal system monomitic or dimitic; basidiospores subglobose to ellipsoid, yellowish to brown, fairly thick- to thick-walled, CB- or CB+; and occurring also on gymnosperms. Some species seem to be restricted to specific hosts, while others appear to be generalists (Murrill 1914; Larsen et al. 1985; Larsen and Cobb-Poule 1990; Sakayaroj et al. 2012; Hattori et al. 2014; Zhou 2015; Ji et al. 2017), but most host information is based on only a few collections.

ClassificationAgaricomycetes, incertae sedis, Hymenochaetales, Hymenochataceae

Type speciesFulvifomes robiniae (Murril) Murrill, North. Polyp.: 49(1914)

Distribution – Cosmopolitan

Disease Symptoms – White pocket rot

            Species of Fulvifomes develop a white pocket rot in their hosts (Larsen et al. 1985; Holmquist 1990). The pockets are irregular and appear to be interconnected by radially oriented decayed areas. The masses of fungal hyphae are white and the wood between decay pockets has a friable and crumbly texture (Larsen et al. 1985).

HostsAcacia sp., Amburana cearensis, Anadenanthera colubrina, Apuleia leiocarpa, Aspidosperma quebracho-blanco, Bombax sp., Casuarina sp., Cedrela sp., Fagus sp., Gliricidia sp., Juniperus sp., Krugiodendron sp., Mimozyganthus carinatus, Mora gonggrijpii, Prosopis sp., Parapiptadenia rigida, Patagonula americana, Peltophorum dubium, Prunus subcoriacea, Quercus sp., Ribes sp., Robinia sp., Schinus sp., Shorea sp., Xylosma venosa, Xylocarpus sp.and Ziziphus mistol (Wright and Blumenfeld 1984; Urcelay et al. 1999; Robledo and Urcelay 2009).

 

Morphological based identification and diversity

Species of Fulvifomes were previously mostly identified as species of Phellinus sensu lato. (Gilbertson and Ryvarden 1987; Larsen and Cobb-Poule 1990; Ryvarden and Gilbertson 1994; Ryvarden 2004; Dai 2010). However, when Wagner and Fischer (2001, 2002) studied the poroid Hymenochaetaceae, they resurrected several genera placed under synonymy with Phellinus, among them, Fulvifomes.

Fulvifomes can be identified by the macro- and micromorphology of its basidiomata. Identification of species is not always accurate when only using morphological characters and the use of molecular data has been shown to be very useful.

Molecular based identification and diversity

The first phylogenetic analysis for Fulvifomes was carried out by Wagner and Fischer (2001, 2002) when studying the poroid Hymenochaetaceae. The authors used sequence data from the LSU rDNA and recovered Fulvifomes among Phellinus species. Latter, Zhou (2014, 2015), Ji et al. (2017) and Salvador-Montoya et al. (2018) described new species using both LSU rDNA and ITS sequence data, in separate or combined analyses. Here we reconstruct the phylogeny of Fulvifomes based on the combined analyses of ITS and LSU rDNA sequence data. This tree includes a reference sequence of the type species of the genus, collected in the same country and on the same host, and the sequence of the type of newly described F. squamosus Salvador-Montoya & Drechsler-Santos (Salvador-Montoya et al. 2018) and provides the first sequence of F. rhytiphloeus (Mont.) Camp.-Sant. & Robledo. Additionally, the tree implies the absence in the Americas of F. fastuosus (Lév.) Bondartseva & S. Herrera, F. merrillii (Murrill) Baltazar & Gibertoni and F. nilgheriensis (Mont.) Bondartseva & S. Herrera, whose type localities are in Asia, and also implies the wider distribution of F. kawakamii (M.J. Larsen, Lombard & Hodges) T. Wagner & M. Fisch., previously thought to be endemic to Hawai’i (EUA, Larsen et al. 1985) (99% similarity and 89% query cover with Fu. kawakamii AY059028 from the type locality, LSU only), and probably identified as Fu. nilgheriensis (CBS 209.36) or Fu. fastuosus (other specimens collected in the Americas).

Recommended genetic markers (Genus level) – LSU

Recommended genetic markers (Species level) – ITS, TEF1-α and RPB2 as additional markers

Matheny et al. (2007) studied the level of resolution of TEF1-α and RPB2 in phylogeny of Basidiomycota, concluding that RPB2 is more efficient to resolve both higher and lower clades, while TEF1-α is better to solve the phylogeny in high taxonomic levels. Considering rDNA markers, LSU rDNA is used for genera delimitation, while ITS rDNA is used to delimit species (James et al. 2006; Matheny et al. 2007; Öpik et al. 2010; Schoch et al. 2012). In Hymenochataceae, these two regions are extensively used in many phylogenies, to discriminate taxa in the family (Wagner and Fischer, 2001, 2002; Larsson et al. 2006). In Fulvifomes, many studies used sequences from ITS and LSU rDNA as markers (Zhou 2014; 2015; Ji et al. 2017; Salvador-Montoya et al. 2018). However, TEF1-α and RPB2 are also being used for delimitation of taxa of poroid Hymenochaetaceae, for instance in Fomitiporia and Phellinus (Amalfi et al. 2010, 2014; Campos-Santana et al. 2014, 2016; Chen and Cui 2017; Morera et al. 2017).

Accepted number of species: There are 58 species epithets in Index Fungorum (2018) under this genus. However, only 24 are accepted.

References: Wagner and Fischer 2001, 2002 (phylogeny), Hattori et al. 2014 (morphology), Zhou 2014, 2015, Ji et al. 2017, Salvador-Montoya et al. 2018 (morphology, phylogeny).

Table  Fulvifomes. Details of the isolates used in the phylogenetic analyses. Ex-type (ex-epitype) strains are in bold and marked with an *

Species Voucher LSU ITS
F. centroamericanus JV0611-8P KX960757
F. centroamericanus JV0611-III* KX960764 KX960763
F. fastuosus LWZ 20140731-13 KR905668 KR905674
F. fastuosus CBS 213.36 AY059057 AY558615
F. fastuosus LWZ 20140801-1 KR905669 KR905675
F. fastuosus UOC DAMIA D27b KJ206286
F. fastuosus LWZ 20140728-29 KR905673
F. fastuosus UOC KAUNP K20 KR867659
F. grenadensis JV1212/2J KX960756
F. grenadensis 1607/66 KX960758
F. grenadensis JRF74 MH048087  MH048097 
F. grenadensis PH6 MH048086  MH048096 
F. hainanensis Dai 11 573* JX866779 KC879263
F. halophilus XG4 JX104752 JX104705
F. imbricatus LWZ 20140728-16* KR905670 KR905677
F. imbricatus LWZ 20140729-26 KR905671 KR905679
F. indicus O 25034 KC879259 KC879262
F. indicus Yuan 5932 JX866777 KC879261
F. kawakamii PPT152 MH048085  MH048095 
F. kawakamii AS1733 MH048083  MH048093 
F. kawakamii AS615 MH048082  MH048092 
F. kawakamii AS2486 MH048084  MH048094 
F. kawakamii CBS 428.86 AY059028
F. krugiodendri JV0904-1* KX960765 KX960762
F. krugiodendri JV0312-24 KX960760 KX960766
F. merrillii PM950703-1 EU035313
F. merrillii PM950703-1 EU035310
F. merrillii JX484013
F. nilgheriensis CBS 209.36 AY059023 AY558633
F. rhytiphloeus AMO763 MH048081 MH048091
F. robiniae CBS 211.36 AY558646
F. siamensis XG2 JX104756 JX104709
F. squamosus CS456* MF479266 MF479267
F. squamosus CS385 MF479265 MF479268
F. squamosus CS444 MF479264 MF479269
F. thailandicus LWZ 20140731-1* KR905665 KR905672
F. xylocarpicola BBH 28342 JX104723 JX104676
Fulvifomes sp. S2T26M1 JX104754 JX104707
Fulvifomes sp. KBXG3 JX104706
Fulvifomes sp. KP311 KP658651
Fulvifomes sp. KP305A KP658646

 

 

 

 

 

 

 

 

Fig.  Phylogenetic tree generated by Bayesian inference (BI) of combined ITS and LSU rDNA sequence data of Fulvifomes species. Forty samples are included in the analyses, which comprise 1224 characters including gaps. Tree was rooted with Fomes fomentarius (DAOM129034) and Amyloporia carbonica (Wilcox-96). Tree topology of the BI was similar to the maximum likelihood (ML) analysis (Figure not shown). The matrix had 1021 phylogenetic informative sites (83, 42%). Estimated base frequencies were as follows; A = 0.241, C = 0.208, G = 0.280, T = 0.271; substitution rates AC = 0.768, AG = 4.476, AT = 1.569, CG = 1.133, CT = 8.068, GT = 1.000; gamma distribution shape parameter α = 0.246. Bayesian posterior probabilities and ML bootstrap values ≥50% are shown respectively near the nodes. The scale bar indicates 0.05 changes. Sequences generated in this study and of the types are in bold.

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